Pedigree Analysis in Human Populations


incipient project with James Lee, History, Cal Tech

KIN: kinship coefficient (coancestry) (done)

gnome.agrenv.mcgill.ca/pub/genetics/software/KIN

http://gnome.agrenv.mcgill.ca/tinker/kin.htm

LINKAGE 5.2: general pedigrees

linkage.cpmc.columiba.edu/software/linkage

PAP: Pedigree Analysis Package (genotype probabilities)

ftp.genetics.utah.edu/pub/software/PAP

PedPack: Pedigree graphics; kinship coefficient (coancestry)?

evolution.genetics.washington.edu/pub/thompson/Pedpack

Pedraw: simple graphics and attributes (done)

ftp.gene.ucl.ac.uk/pub/packages/dcurtis

Vitesse: liklihood on pedigrees, kinship coefficient (coancestry)?

watson.hgen.pitt.edu [not avail yet]

MAPMAKER/QTL: genome linkage

ftp-genome.wi.mit.edu/distribution/software/newqtl and /mapmaker3

http://ftp-genome.wi.mit.edu/distribution/genome_software

Software and preprints available
linkage software list
KIN
MultiMap Home Page
Software written by Dave Curtis
FASTLINK Home Page
GAS2.0
LDB The GENETIC LOCATION DATABASE
Genome Center Information and Documentation
PHYLIP Home Page
The Human Genetic Analysis Resource
University of Michigan: Statistical Genetics Software