...Any luck on processing the fragments?
Searching fragments where matching in types of vertices must be performed:
In this case you must provide partition of vertices in original network and
partitions of vertices in fragments and demand matching of classes using
I prepared files 1212.clu and pjk_bio1.paj
(lines following empty lines are description of edges, they are skipped by
they can be deleted as well, but you need some time to do that)..
I prepared new log file (File/Repeat Session) when asked for files answer:
4. 1212.clu - classifies nodes by type of organization, 1-6
And all the rest will be done (result in vectors.vec).
All network files, macro and reculting vectors.vec are attached
>One question: since these are all 3-cycles, wouldnt you expect
>the sum of numbers in the vector columns to add up to multiples of 3 and
>to equal 3*frequency as computed in the *.rep file?
The numbers you get in vectors.vec are 1, 2, 3, 4, 5, or 6,
and these are in your example the types (colors) of vertices that are in the
and not the counts, as you think.
If would like to get the counts (how many times each vertex belongs
to specified fragment, you must use result of fragment searching that
is stored in a partition.
I attached the modified log file (bio_frag1.log) that saves that result in
vectors1.vec as well (except the first column that is actually the input
partition - numbers 1, 2, 3, 4, 5, or 6).
vectors1.vec is also attached.
Università di Modena e Reggio Emilia
CNRS UMR 7041, Archéologies et Sciences de l' Antiquité, Paris
CNRS UMR 8504 - Géographie-cités èquipe, Paris
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Tuesday, 19 Aug 2003, 17:11